Publications

Nucleic acids research. 2013-04-01; 41.8: e91.
SPA: a short peptide assembler for metagenomic data
Yang Y, Yooseph S
PMID: 23435317
Microbial ecology. 2013-04-01; 65.3: 773-80.
The restoration of the vaginal microbiota after treatment for bacterial vaginosis with metronidazole or probiotics
Ling Z, Liu X, Chen W, Luo Y, Yuan L, Xia Y, Nelson KE, Huang S, Zhang S, Wang Y, Yuan J, Li L, Xiang C
PMID: 23250116
Proceedings of the National Academy of Sciences of the United States of America. 2013-03-26; 110.13: 5010-5.
Molecular mechanism of quinone signaling mediated through S-quinonization of a YodB family repressor QsrR
Ji Q, Zhang L, Jones MB, Sun F, Deng X, Liang H, Cho H, Brugarolas P, Gao YN, Peterson SN, Lan L, Bae T, He C
PMID: 23479646
Genome announcements. 2013-03-14; 1.2: e0004413.
Genome Sequence of the Group III Clostridium botulinum Strain Eklund-C
Hassan KA, Tetu SG, Elbourne LD, Johnson EA, Paulsen IT
PMID: 23516187
PLoS genetics. 2013-03-14; 9.3: e1003309.
Complex patterns of genomic admixture within southern Africa
Petersen DC, Libiger O, Tindall EA, Hardie RA, Hannick LI, Glashoff RH, Mukerji M, Indian Genome Variation Consortium, Fernandez P, Haacke W, Schork NJ, Hayes VM
PMID: 23516368
Cell host & microbe. 2013-03-13; 13.3: 314-23.
Defining influenza A virus hemagglutinin antigenic drift by sequential monoclonal antibody selection
Das SR, Hensley SE, Ince WL, Brooke CB, Subba A, Delboy MG, Russ G, Gibbs JS, Bennink JR, Yewdell JW
PMID: 23498956
Nature methods. 2013-03-01; 10.3: 228-38.
Critical assessment of automated flow cytometry data analysis techniques
Aghaeepour N, Finak G, FlowCAP Consortium, DREAM Consortium, Hoos H, Mosmann TR, Brinkman R, Gottardo R, Scheuermann RH
PMID: 23396282
Nature biotechnology. 2013-03-01; 31.3: 211-2.
Single-cell sequencing in its prime
Lasken RS
PMID: 23471069
PLoS pathogens. 2013-03-01; 9.3: e1003236.
Prophage induction is enhanced and required for renal disease and lethality in an EHEC mouse model
Tyler JS, Beeri K, Reynolds JL, Alteri CJ, Skinner KG, Friedman JH, Eaton KA, Friedman DI
PMID: 23555250
Genome announcements. 2013-02-21; 1.1:
Draft Genome Sequence of Enterococcus faecalis PC1.1, a Candidate Probiotic Strain Isolated from Human Feces
O Cuív P, Klaassens ES, Smith WJ, Mondot S, Durkin AS, Harkins DM, Foster L, McCorrison J, Torralba M, Nelson KE, Morrison M
PMID: 23469340

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