Publications

BMC bioinformatics. 2009-09-23; 10.309.
SSWAP: A Simple Semantic Web Architecture and Protocol for semantic web services
Gessler DD, Schiltz GS, May GD, Avraham S, Town CD, Grant D, Nelson RT
PMID: 19775460
Nature. 2009-09-17; 461.7262: 393-8.
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans
Haas BJ, Kamoun S, Zody MC, Jiang RH, Handsaker RE, Cano LM, Grabherr M, Kodira CD, Raffaele S, Torto-Alalibo T, Bozkurt TO, Ah-Fong AM, Alvarado L, Anderson VL, Armstrong MR, Avrova A, Baxter L, Beynon J, Boevink PC, Bollmann SR, Bos JI, Bulone V, Cai G, Cakir C, Carrington JC, Chawner M, Conti L, Costanzo S, Ewan R, Fahlgren N, Fischbach MA, Fugelstad J, Gilroy EM, Gnerre S, Green PJ, Grenville-Briggs LJ, Griffith J, Grünwald NJ, Horn K, Horner NR, Hu CH, Huitema E, Jeong DH, Jones AM, Jones JD, Jones RW, Karlsson EK, Kunjeti SG, Lamour K, Liu Z, Ma L, Maclean D, Chibucos MC, McDonald H, McWalters J, Meijer HJ, Morgan W, Morris PF, Munro CA, O'Neill K, Ospina-Giraldo M, Pinzón A, Pritchard L, Ramsahoye B, Ren Q, Restrepo S, Roy S, Sadanandom A, Savidor A, Schornack S, Schwartz DC, Schumann UD, Schwessinger B, Seyer L, Sharpe T, Silvar C, Song J, Studholme DJ, Sykes S, Thines M, van de Vondervoort PJ, Phuntumart V, Wawra S, Weide R, Win J, Young C, Zhou S, Fry W, Meyers BC, van West P, Ristaino J, Govers F, Birch PR, Whisson SC, Judelson HS, Nusbaum C
PMID: 19741609
Proceedings of the National Academy of Sciences of the United States of America. 2009-09-15; 106.37: 15527-33.
The genomic basis of trophic strategy in marine bacteria
Lauro FM, McDougald D, Thomas T, Williams TJ, Egan S, Rice S, DeMaere MZ, Ting L, Ertan H, Johnson J, Ferriera S, Lapidus A, Anderson I, Kyrpides N, Munk AC, Detter C, Han CS, Brown MV, Robb FT, Kjelleberg S, Cavicchioli R
PMID: 19805210
PLoS pathogens. 2009-09-01; 5.9: e1000570.
Evolutionarily conserved herpesviral protein interaction networks
Fossum E, Friedel CC, Rajagopala SV, Titz B, Baiker A, Schmidt T, Kraus T, Stellberger T, Rutenberg C, Suthram S, Bandyopadhyay S, Rose D, von Brunn A, Uhlmann M, Zeretzke C, Dong YA, Boulet H, Koegl M, Bailer SM, Koszinowski U, Ideker T, Uetz P, Zimmer R, Haas J
PMID: 19730696
Genome research. 2009-09-01; 19.9: 1516-26.
Mobile elements create structural variation: analysis of a complete human genome
Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S, Batzer MA, Jorde LB
PMID: 19439515
Journal of virology. 2009-09-01; 83.17: 8832-41.
Mixed infection and the genesis of influenza virus diversity
Ghedin E, Fitch A, Boyne A, Griesemer S, Depasse J, Bera J, Zhang X, Halpin RA, Smit M, Jennings L, St George K, Holmes EC, Spiro DJ
PMID: 19553313
Applied and environmental microbiology. 2009-09-01; 75.18: 5821-30.
Discovery of [NiFe] hydrogenase genes in metagenomic DNA: cloning and heterologous expression in Thiocapsa roseopersicina
Maróti G, Tong Y, Yooseph S, Baden-Tillson H, Smith HO, Kovács KL, Frazier M, Venter JC, Xu Q
PMID: 19633107
BMC biotechnology. 2009-08-23; 9.72.
High quality protein microarray using in situ protein purification
Kwon K, Grose C, Pieper R, Pandya GA, Fleischmann RD, Peterson SN
PMID: 19698181
Applied and environmental microbiology. 2009-08-01; 75.15: 5047-57.
Coastal strains of marine Synechococcus species exhibit increased tolerance to copper shock and a distinctive transcriptional response relative to those of open-ocean strains
Stuart RK, Dupont CL, Johnson DA, Paulsen IT, Palenik B
PMID: 19502430
Nature. 2009-07-16; 460.7253: 352-8.
The genome of the blood fluke Schistosoma mansoni
Berriman M, Haas BJ, LoVerde PT, Wilson RA, Dillon GP, Cerqueira GC, Mashiyama ST, Al-Lazikani B, Andrade LF, Ashton PD, Aslett MA, Bartholomeu DC, Blandin G, Caffrey CR, Coghlan A, Coulson R, Day TA, Delcher A, DeMarco R, Djikeng A, Eyre T, Gamble JA, Ghedin E, Gu Y, Hertz-Fowler C, Hirai H, Hirai Y, Houston R, Ivens A, Johnston DA, Lacerda D, Macedo CD, McVeigh P, Ning Z, Oliveira G, Overington JP, Parkhill J, Pertea M, Pierce RJ, Protasio AV, Quail MA, Rajandream MA, Rogers J, Sajid M, Salzberg SL, Stanke M, Tivey AR, White O, Williams DL, Wortman J, Wu W, Zamanian M, Zerlotini A, Fraser-Liggett CM, Barrell BG, El-Sayed NM
PMID: 19606141

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