Publications

Bioinformatics (Oxford, England). 2008-04-15; 24.8: 1035-40.
Consensus generation and variant detection by Celera Assembler
Denisov G, Walenz B, Halpern AL, Miller J, Axelrod N, Levy S, Sutton G
PMID: 18321888
PLoS genetics. 2008-04-11; 4.4: e1000046.
Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus
Fedorova ND, Khaldi N, Joardar VS, Maiti R, Amedeo P, Anderson MJ, Crabtree J, Silva JC, Badger JH, Albarraq A, Angiuoli S, Bussey H, Bowyer P, Cotty PJ, Dyer PS, Egan A, Galens K, Fraser-Liggett CM, Haas BJ, Inman JM, Kent R, Lemieux S, Malavazi I, Orvis J, Roemer T, Ronning CM, Sundaram JP, Sutton G, Turner G, Venter JC, White OR, Whitty BR, Youngman P, Wolfe KH, Goldman GH, Wortman JR, Jiang B, Denning DW, Nierman WC
PMID: 18404212
BMC bioinformatics. 2008-04-11; 9.191.
Novel computational methods for increasing PCR primer design effectiveness in directed sequencing
Li K, Brownley A, Stockwell TB, Beeson K, McIntosh TC, Busam D, Ferriera S, Murphy S, Levy S
PMID: 18405373
BMC bioinformatics. 2008-04-10; 9.182.
Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering
Yooseph S, Li W, Sutton G
PMID: 18402669
Nature. 2008-04-03; 452.7187: 629-32.
Functional metagenomic profiling of nine biomes
Dinsdale EA, Edwards RA, Hall D, Angly F, Breitbart M, Brulc JM, Furlan M, Desnues C, Haynes M, Li L, McDaniel L, Moran MA, Nelson KE, Nilsson C, Olson R, Paul J, Brito BR, Ruan Y, Swan BK, Stevens R, Valentine DL, Thurber RV, Wegley L, White BA, Rohwer F
PMID: 18337718
Proteomics. 2008-04-01; 8.7: 1442-58.
Characterizing the dynamic nature of the Yersinia pestis periplasmic proteome in response to nutrient exhaustion and temperature change
Pieper R, Huang ST, Clark DJ, Robinson JM, Parmar PP, Alami H, Bunai CL, Perry RD, Fleischmann RD, Peterson SN
PMID: 18383009
Eukaryotic cell. 2008-04-01; 7.4: 575-83.
Impaired ribosome biogenesis disrupts the integration between morphogenesis and nuclear duplication during the germination of Aspergillus fumigatus
Bhabhra R, Richie DL, Kim HS, Nierman WC, Fortwendel J, Aris JP, Rhodes JC, Askew DS
PMID: 18296619
Archives of microbiology. 2008-04-01; 189.4: 313-24.
The influence of cultivation methods on Shewanella oneidensis physiology and proteome expression
Elias DA, Tollaksen SL, Kennedy DW, Mottaz HM, Giometti CS, McLean JS, Hill EA, Pinchuk GE, Lipton MS, Fredrickson JK, Gorby YA
PMID: 18030449
Omics : a journal of integrative biology. 2008-03-01; 12.1: 33-59.
Characterizing regulation of metabolism in Geobacter sulfurreducens through genome-wide expression data and sequence analysis
Mahadevan R, Yan B, Postier B, Nevin KP, Woodard TL, O'Neil R, Coppi MV, Methé BA, Krushkal J
PMID: 18266557
Journal of bacteriology. 2008-03-01; 190.6: 1956-65.
Variation in the group B Streptococcus CsrRS regulon and effects on pathogenicity
Jiang SM, Ishmael N, Dunning Hotopp J, Puliti M, Tissi L, Kumar N, Cieslewicz MJ, Tettelin H, Wessels MR
PMID: 18203834

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