Publications

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 2025-01-01; 30.711-716.
Earth Friendly Computation: Applying Indigenous Data Lifecycles in Medical and Sovereign AI
Fox K, Tsosie K, Ioannidis A, Wasik K, Calac A, Dawson E
PMID: 39670409
Methods in molecular biology (Clifton, N.J.). 2025-01-01; 2927.143-163.
BV-BRC Zoonosis or Reverse Zoonosis Example
Capria A, Singh I, Zmasek C, Lefkowitz EJ, Scheuermann R
PMID: 40455156
Science (New York, N.Y.). 2024-12-20; 386.6728: 1351-1353.
Confronting risks of mirror life
Adamala KP, Agashe D, Belkaid Y, Bittencourt DMC, Cai Y, Chang MW, Chen IA, Church GM, Cooper VS, Davis MM, Devaraj NK, Endy D, Esvelt KM, Glass JI, Hand TW, Inglesby TV, Isaacs FJ, James WG, Jones JDG, Kay MS, Lenski RE, Liu C, Medzhitov R, Nicotra ML, Oehm SB, Pannu J, Relman DA, Schwille P, Smith JA, Suga H, Szostak JW, Talbot NJ, Tiedje JM, Venter JC, Winter G, Zhang W, Zhu X, Zuber MT
PMID: 39666824
Cell host & microbe. 2024-12-11; 32.12: 2131-2147.e8.
A trivalent mucosal vaccine encoding phylogenetically inferred ancestral RBD sequences confers pan-Sarbecovirus protection in mice
Case JB, Sanapala S, Dillen C, Rhodes V, Zmasek C, Chicz TM, Switzer CE, Scheaffer SM, Georgiev G, Jacob-Dolan C, Hauser BM, Dos Anjos DCC, Adams LJ, Soudani N, Liang CY, Ying B, McNamara RP, Scheuermann RH, Boon ACM, Fremont DH, Whelan SPJ, Schmidt AG, Sette A, Grifoni A, Frieman MB, Diamond MS
PMID: 39561781
Biotechnology advances. 2024-12-01; 77.108462.
The current progress of tandem chemical and biological plastic upcycling
Hu Y, Tian Y, Zou C, Moon TS
PMID: 39395608
Clinical and translational gastroenterology. 2024-12-01; 15.12: e00796.
Correction to: Genetic Risk, Dysbiosis, and Treatment Stratification Using Host Genome and Gut Microbiome in Inflammatory Bowel Disease
Moustafa A, Li W, Anderson EL, MWong EH, Dulai PS, Sandborn WJ, Biggs W, Yooseph S, Jones MB, Venter CJ, Nelson KE, Chang JT, Telenti A, Boland BS
PMID: 39656168
Trends in biotechnology. 2024-11-23;
Producing multiple chemicals through biological upcycling of waste poly(ethylene terephthalate)
Diao J, Tian Y, Hu Y, Moon TS
PMID: 39581772
Scientific reports. 2024-11-12; 14.1: 27637.
Major alteration of lung microbiome and the host responses in critically ill COVID-19 patients with high viral load
Bustos IG, Wiscovitch-Russo R, Singh H, Sievers BL, Matsuoka M, Freire M, Tan GS, Cala MP, Guerrero JL, Martin-Loeches I, Gonzalez-Juarbe N, Reyes LF
PMID: 39532981
Annual review of microbiology. 2024-11-07; 78.1: 213-232.
Molecular Mechanisms for Iron Uptake and Homeostasis in Marine Eukaryotic Phytoplankton
Lampe RH, Coale TH, McQuaid JB, Allen AE
PMID: 39018471
Nature communications. 2024-11-05; 15.1: 9525.
The gut microbiome is associated with susceptibility to febrile malaria in Malian children
Van Den Ham KM, Bower LK, Li S, Lorenzi H, Doumbo S, Doumtabe D, Kayentao K, Ongoiba A, Traore B, Crompton PD, Schmidt NW
PMID: 39500866

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