Publications

Nature communications. 2016-02-09; 7.10507.
Genomic insights into the Ixodes scapularis tick vector of Lyme disease
Gulia-Nuss M, Nuss AB, Meyer JM, Sonenshine DE, Roe RM, Waterhouse RM, Sattelle DB, de la Fuente J, Ribeiro JM, Megy K, Thimmapuram J, Miller JR, Walenz BP, Koren S, Hostetler JB, Thiagarajan M, Joardar VS, Hannick LI, Bidwell S, Hammond MP, Young S, Zeng Q, Abrudan JL, Almeida FC, Ayllón N, Bhide K, Bissinger BW, Bonzon-Kulichenko E, Buckingham SD, Caffrey DR, Caimano MJ, Croset V, Driscoll T, Gilbert D, Gillespie JJ, Giraldo-Calderón GI, Grabowski JM, Jiang D, Khalil SMS, Khalil SM, Kim D, Kocan KM, Koči J, Kuhn RJ, Kurtti TJ, Lees K, Lang EG, Kennedy RC, Kwon H, Perera R, Qi Y, Radolf JD, Sakamoto JM, Sánchez-Gracia A, Severo MS, Silverman N, Šimo L, Tojo M, Tornador C, Van Zee JP, Vázquez J, Vieira FG, Villar M, Wespiser AR, Yang Y, Zhu J, Arensburger P, Pietrantonio PV, Barker SC, Shao R, Zdobnov EM, Hauser F, Grimmelikhuijzen CJ, Grimmelikhuijzen CJP, Park Y, Rozas J, Benton R, Pedra JHF, Pedra JH, Nelson DR, Unger MF, Tubio JMC, Tubio JM, Tu Z, Robertson HM, Shumway M, Sutton G, Wortman JR, Lawson D, Wikel SK, Nene VM, Fraser CM, Collins FH, Birren B, Nelson KE, Caler E, Hill CA
PMID: 26856261
Scientific reports. 2016-02-08; 6.20606.
The effect of helminth infection on the microbial composition and structure of the caprine abomasal microbiome
Li RW, Li W, Sun J, Yu P, Baldwin RL, Urban JF
PMID: 26853110
Nature genetics. 2016-02-01; 48.2: 195-200.
Quantifying influenza virus diversity and transmission in humans
Poon LL, Song T, Rosenfeld R, Lin X, Rogers MB, Zhou B, Sebra R, Halpin RA, Guan Y, Twaddle A, DePasse JV, Stockwell TB, Wentworth DE, Holmes EC, Greenbaum B, Peiris JS, Cowling BJ, Ghedin E
PMID: 26727660
The ISME journal. 2016-02-01; 10.2: 514-26.
Temporal variation selects for diet-microbe co-metabolic traits in the gut of Gorilla spp
Gomez A, Rothman JM, Petrzelkova K, Yeoman CJ, Vlckova K, Umaña JD, Carr M, Modry D, Todd A, Torralba M, Nelson KE, Stumpf RM, Wilson BA, Blekhman R, White BA, Leigh SR
PMID: 26315972
The Journal of infectious diseases. 2016-01-15; 213.2: 173-82.
Evolutionary Dynamics of Influenza A Viruses in US Exhibition Swine
Nelson MI, Wentworth DE, Das SR, Sreevatsan S, Killian ML, Nolting JM, Slemons RD, Bowman AS
PMID: 26243317
ACS synthetic biology. 2016-01-15; 5.1: 104-9.
In-Yeast Engineering of a Bacterial Genome Using CRISPR/Cas9
Tsarmpopoulos I, Gourgues G, Blanchard A, Vashee S, Jores J, Lartigue C, Sirand-Pugnet P
PMID: 26592087
Nature communications. 2016-01-07; 7.10147.
Local admixture of amplified and diversified secreted pathogenesis determinants shapes mosaic Toxoplasma gondii genomes
Lorenzi H, Khan A, Behnke MS, Namasivayam S, Swapna LS, Hadjithomas M, Karamycheva S, Pinney D, Brunk BP, Ajioka JW, Ajzenberg D, Boothroyd JC, Boyle JP, Dardé ML, Diaz-Miranda MA, Dubey JP, Fritz HM, Gennari SM, Gregory BD, Kim K, Saeij JP, Su C, White MW, Zhu XQ, Howe DK, Rosenthal BM, Grigg ME, Parkinson J, Liu L, Kissinger JC, Roos DS, Sibley LD
PMID: 26738725
Applied and environmental microbiology. 2016-01-04; 82.5: 1613-24.
Trace Metal Acquisition by Marine Heterotrophic Bacterioplankton with Contrasting Trophic Strategies
Hogle SL, Thrash JC, Dupont CL, Barbeau KA
PMID: 26729720
Cytometry. Part A : the journal of the International Society for Analytical Cytology. 2016-01-01; 89.1: 13-5.
Automated analysis of flow cytometry data comes of age
Brinkman RR, Aghaeepour N, Finak G, Gottardo R, Mosmann T, Scheuermann RH
PMID: 26812230
Cytometry. Part A : the journal of the International Society for Analytical Cytology. 2016-01-01; 89.1: 71-88.
Mapping cell populations in flow cytometry data for cross-sample comparison using the Friedman-Rafsky test statistic as a distance measure
Hsiao C, Liu M, Stanton R, McGee M, Qian Y, Scheuermann RH
PMID: 26274018

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