Publications

Nucleic acids research. 2025-11-18;
BV-BRC: a unified bacterial and viral bioinformatics resource with expanded functionality and AI integration
Shukla M, Wattam AR, Aleman A, Bhattacharya R, Bowers N, Brettin T, Capria A, Chia N, Cucinell C, Davis JJ, Dempsey DM, Dickerman A, Dietrich EM, Gokdemir O, Hendrickson RC, Kenyon RW, Klahn B, Kuscuoglu M, Lefkowitz EJ, Ma H, Machi D, Macken C, Mann CM, Mao C, Nguyen M, Olsen GJ, Olson RD, Overbeek R, Owens SM, Parrello B, Poretsky R, Pusch GD, Ramanathan A, Sheriff JT, Singh I, Stewart L, VanOeffelen M, Vonstein V, Warren AS, Wilke A, Zmasek CM, Zuniga A, Stevens RL
PMID: 41251138
The Journal of infectious diseases. 2025-11-14; 232.5: 1097-1107.
Escherichia coli Type III Secretion System 2 Is Associated With Patient Mortality in Bloodstream Infections
Thaden JT, Cox P, Ankrah PK, Khandelwal S, Bourgeois JS, Poteete O, Ruffin F, Arepally G, Sutton G, Brinkac L, Clarke TH, Ko DC, Fouts DE, Fowler VG
PMID: 40404560
mBio. 2025-11-12; 16.11: e0198825.
Integrating genomic and Tn-Seq data to identify common in vivo fitness mechanisms across multiple bacterial species
Fouts DE, Clarke TH, Severin GB, Brown AN, Ottosen EN, Holmes CL, Moricz BS, Mason S, Sinha R, Anderson MT, DiRita V, Bachman MA, Mobley HLT
PMID: 40981419
Cell host & microbe. 2025-11-12; 33.11: 1997-1998.
Intestinal REG3 Lectins Protect against Alcoholic Steatohepatitis by Reducing Mucosa-Associated Microbiota and Preventing Bacterial Translocation
Wang L, Fouts DE, Stärkel P, Hartmann P, Chen P, Llorente C, Depew J, Moncera K, Ho SB, Brenner DA, Hooper LV, Schnabl B
PMID: 41109221
Proceedings of the National Academy of Sciences of the United States of America. 2025-11-04; 122.44: e2507092122.
Inflammasome targeting for periodontitis prevention is sex dependent
Alves T, Swanson KV, Girnary MS, Freire M, Moss K, Divaris K, Beck J, Santos PCP, Brickey WJ, Wrobel JA, Min HY, Syed M, Morelli T, Seaman WT, Preisser JS, Hu D, Preisser H, Makhanova N, Susin C, Vias NP, Styner M, Zhang S, Pirih FQ, Chang J, Gill HS, Lietzan AD, Webster-Cyriaque J, Ting JPY, Marchesan JT
PMID: 41144672
Molecular psychiatry. 2025-11-01; 30.11: 5326-5337.
Multivariate patterns linking brain microstructure to temperament and behavior in adolescent eating disorders
Makowski C, Shafiei G, Martinho M, Hagler DJ, Pecheva D, Dale AM, Fennema-Notestine C, Bischoff-Grethe A, Wierenga CE
PMID: 40670681
Veterinary microbiology. 2025-11-01; 310.110705.
Detection of Neorickettsia risticii in antemortem fecal and postmortem fetal samples, with genomic insights from complete genome sequencing of a strain recovered from an aborted equine fetus
Uprety T, Durazo J, Paul L, Metiner K, Ruby R, Loynachan A, Janes J, Kenndy L, Cassone L, Molly E, Quick M, Morgan J, Beyhan S, Erol E
PMID: 40913922
Scientific reports. 2025-10-21; 15.1: 36634.
Identification of a novel bacteriophage attachment site into ffs, the 4.5S non-coding RNA component of the signal recognition particle
Stevens RH, Zhang H, Fouts DE
PMID: 41120537
Antibiotics (Basel, Switzerland). 2025-10-10; 14.10:
In Silico Identification and Molecular Characterization of Lentilactobacillus hilgardii Antimicrobial Peptides with Activity Against Carbapenem-Resistant Acinetobacter baumannii
Appel A, Velazco L, Alreja AB, LeClair K, Duggal AP, Vashee I, Taal AM, Gonzalez-Juarbe N, Fouts DE
PMID: 41148698

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