Publications

Journal of virology. 2011-07-01; 85.14: 6923-9.
Extensive geographical mixing of 2009 human H1N1 influenza A virus in a single university community
Holmes EC, Ghedin E, Halpin RA, Stockwell TB, Zhang XQ, Fleming R, Davey R, Benson CA, Mehta S, Taplitz R, Liu YT, Brouwer KC, Wentworth DE, Lin X, Schooley RT, INSIGHT FLU002 Study Group
PMID: 21593168
Genomics. 2011-07-01; 98.1: 26-39.
Investigating the genome diversity of B. cereus and evolutionary aspects of B. anthracis emergence
Papazisi L, Rasko DA, Ratnayake S, Bock GR, Remortel BG, Appalla L, Liu J, Dracheva T, Braisted JC, Shallom S, Jarrahi B, Snesrud E, Ahn S, Sun Q, Rilstone J, Okstad OA, Kolstø AB, Fleischmann RD, Peterson SN
PMID: 21447378
Journal of microbiological methods. 2011-07-01; 86.1: 62-8.
A rapid fingerprinting approach to distinguish between closely related strains of Shewanella
Kan J, Flood B, McCrow JP, Kim JS, Tan L, Nealson KH
PMID: 21477623
Standards in genomic sciences. 2011-07-01; 4.3: 418-29.
TheViral MetaGenome Annotation Pipeline(VMGAP):an automated tool for the functional annotation of viral Metagenomic shotgun sequencing data
Lorenzi HA, Hoover J, Inman J, Safford T, Murphy S, Kagan L, Williamson SJ
PMID: 21886867
Bioinformatics (Oxford, England). 2011-07-01; 27.13: 1869-70.
Sim4db and Leaff: utilities for fast batch spliced alignment and sequence indexing
Walenz B, Florea L
PMID: 21551146
Applied and environmental microbiology. 2011-07-01; 77.13: 4579-88.
Bacterial subfamily of LuxR regulators that respond to plant compounds
Subramoni S, Gonzalez JF, Johnson A, Péchy-Tarr M, Rochat L, Paulsen I, Loper JE, Keel C, Venturi V
PMID: 21531826
Journal of computational biology : a journal of computational molecular cell biology. 2011-07-01; 18.7: 895-906.
Big cat phylogenies, consensus trees, and computational thinking
Sul SJ, Williams TL
PMID: 21563975
Nature methods. 2011-06-29; 8.7: 528-9.
PSICQUIC and PSISCORE: accessing and scoring molecular interactions
Aranda B, Blankenburg H, Kerrien S, Brinkman FS, Ceol A, Chautard E, Dana JM, De Las Rivas J, Dumousseau M, Galeota E, Gaulton A, Goll J, Hancock RE, Isserlin R, Jimenez RC, Kerssemakers J, Khadake J, Lynn DJ, Michaut M, O'Kelly G, Ono K, Orchard S, Prieto C, Razick S, Rigina O, Salwinski L, Simonovic M, Velankar S, Winter A, Wu G, Bader GD, Cesareni G, Donaldson IM, Eisenberg D, Kleywegt GJ, Overington J, Ricard-Blum S, Tyers M, Albrecht M, Hermjakob H
PMID: 21716279
Genome biology. 2011-06-27; 12.6: 117.
Genomes of uncultured eukaryotes: sorting FACS from fiction
Worden AZ, Dupont C, Allen AE
PMID: 21722350
BMC microbiology. 2011-06-24; 11.147.
In vivo versus in vitro protein abundance analysis of Shigella dysenteriae type 1 reveals changes in the expression of proteins involved in virulence, stress and energy metabolism
Kuntumalla S, Zhang Q, Braisted JC, Fleischmann RD, Peterson SN, Donohue-Rolfe A, Tzipori S, Pieper R
PMID: 21702961

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