Publications

Cell. 2022-01-20; 185.2: 345-360.e28.
Fundamental behaviors emerge from simulations of a living minimal cell
Thornburg ZR, Bianchi DM, Brier TA, Gilbert BR, Earnest TM, Melo MCR, Safronova N, Sáenz JP, Cook AT, Wise KS, Hutchison CA, Smith HO, Glass JI, Luthey-Schulten Z
PMID: 35063075
Frontiers in oral health. 2022-01-07; 2.796140.
Tetramic Acids Mutanocyclin and Reutericyclin A, Produced by Streptococcus mutans Strain B04Sm5 Modulate the Ecology of an in vitro Oral Biofilm
Uranga C, Nelson KE, Edlund A, Baker JL
PMID: 35048077
Metabolites. 2022-01-05; 12.1:
Machine Learning Applied to Omics Datasets Predicts Mortality in Patients with Alcoholic Hepatitis
Gao B, Wu TC, Lang S, Jiang L, Duan Y, Fouts DE, Zhang X, Tu XM, Schnabl B
PMID: 35050163
Pediatric research. 2022-01-01; 91.1: 154-162.
Antibiotics at birth and later antibiotic courses: effects on gut microbiota
Ainonen S, Tejesvi MV, Mahmud MR, Paalanne N, Pokka T, Li W, Nelson KE, Salo J, Renko M, Vänni P, Pirttilä AM, Tapiainen T
PMID: 33824448
Cellular microbiology. 2021-12-01; 23.12: e13392.
Blockade of endoplasmic reticulum stress-induced cell death by Ureaplasma parvum vacuolating factor
Nishiumi F, Kawai Y, Nakura Y, Yoshimura M, Wu HN, Hamaguchi M, Kakizawa S, Suzuki Y, Glass JI, Yanagihara I
PMID: 34490709
Journal of leukocyte biology. 2021-12-01; 110.6: 1225-1239.
Corticosteroid treatment in COVID-19 modulates host inflammatory responses and transcriptional signatures of immune dysregulation
Pinski AN, Steffen TL, Zulu MZ, George SL, Dickson A, Tifrea D, Maroney KJ, Tedeschi N, Zhang Y, Scheuermann RH, Pinto AK, Brien JD, Messaoudi I
PMID: 34730254
Journal of hepatology. 2021-12-01; 75.6: 1465-1475.
Intestinal virome and therapeutic potential of bacteriophages in liver disease
Hsu C, Hsu CL, Duan Y, Fouts DE, Schnabl B
PMID: 34437908
International journal of molecular sciences. 2021-11-07; 22.21:
Multi-Omics Study of Keystone Species in a Cystic Fibrosis Microbiome
Silveira CB, Cobián-Güemes AG, Uranga C, Baker JL, Edlund A, Rohwer F, Conrad D
PMID: 34769481
Microbial ecology. 2021-11-01; 82.4: 1074-1079.
Microbial Species that Initially Colonize the Human Gut at Birth or in Early Childhood Can Stay in Human Body for Lifetime
Li W, Nelson KE
PMID: 33410935
EBioMedicine. 2021-11-01; 73.103644.
Interactions between fecal gut microbiome, enteric pathogens, and energy regulating hormones among acutely malnourished rural Gambian children
Nabwera HM, Espinoza JL, Worwui A, Betts M, Okoi C, Sesay AK, Bancroft R, Agbla SC, Jarju S, Bradbury RS, Colley M, Jallow AT, Liu J, Houpt ER, Prentice AM, Antonio M, Bernstein RM, Dupont CL, Kwambana-Adams BA
PMID: 34695658

Pages