Publications

Journal of bacteriology. 2010-07-01; 192.14: 3838-9.
Genome sequence of the novel marine member of the Gammaproteobacteria strain HTCC5015
Thrash JC, Stingl U, Cho JC, Ferriera S, Johnson J, Vergin KL, Giovannoni SJ
PMID: 20472792
PLoS neglected tropical diseases. 2010-06-15; 4.6: e716.
New assembly, reannotation and analysis of the Entamoeba histolytica genome reveal new genomic features and protein content information
Lorenzi HA, Puiu D, Miller JR, Brinkac LM, Amedeo P, Hall N, Caler EV
PMID: 20559563
Bioinformatics (Oxford, England). 2010-06-15; 26.12: 1488-92.
Ergatis: a web interface and scalable software system for bioinformatics workflows
Orvis J, Crabtree J, Galens K, Gussman A, Inman JM, Lee E, Nampally S, Riley D, Sundaram JP, Felix V, Whitty B, Mahurkar A, Wortman J, White O, Angiuoli SV
PMID: 20413634
BMC genomics. 2010-06-11; 11.374.
Reassociation kinetics-based approach for partial genome sequencing of the cattle tick, Rhipicephalus (Boophilus) microplus
Guerrero FD, Moolhuijzen P, Peterson DG, Bidwell S, Caler E, Bellgard M, Nene VM, Djikeng A
PMID: 20540747
Proceedings of the National Academy of Sciences of the United States of America. 2010-06-08; 107.23: 10567-72.
History of biological metal utilization inferred through phylogenomic analysis of protein structures
Dupont CL, Butcher A, Valas RE, Bourne PE, Caetano-Anollés G
PMID: 20498051
PloS one. 2010-06-08; 5.6: e10922.
De Novo assembly of the complete genome of an enhanced electricity-producing variant of Geobacter sulfurreducens using only short reads
Nagarajan H, Butler JE, Klimes A, Qiu Y, Zengler K, Ward J, Young ND, Methé BA, Palsson BØ, Lovley DR, Barrett CL
PMID: 20544019
Nature. 2010-06-03; 465.7298: 617-21.
The Ectocarpus genome and the independent evolution of multicellularity in brown algae
Cock JM, Sterck L, Rouzé P, Scornet D, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Aury JM, Badger JH, Beszteri B, Billiau K, Bonnet E, Bothwell JH, Bowler C, Boyen C, Brownlee C, Carrano CJ, Charrier B, Cho GY, Coelho SM, Collén J, Corre E, Da Silva C, Delage L, Delaroque N, Dittami SM, Doulbeau S, Elias M, Farnham G, Gachon CM, Gschloessl B, Heesch S, Jabbari K, Jubin C, Kawai H, Kimura K, Kloareg B, Küpper FC, Lang D, Le Bail A, Leblanc C, Lerouge P, Lohr M, Lopez PJ, Martens C, Maumus F, Michel G, Miranda-Saavedra D, Morales J, Moreau H, Motomura T, Nagasato C, Napoli CA, Nelson DR, Nyvall-Collén P, Peters AF, Pommier C, Potin P, Poulain J, Quesneville H, Read B, Rensing SA, Ritter A, Rousvoal S, Samanta M, Samson G, Schroeder DC, Ségurens B, Strittmatter M, Tonon T, Tregear JW, Valentin K, von Dassow P, Yamagishi T, Van de Peer Y, Wincker P
PMID: 20520714
Biochimica et biophysica acta. 2010-06-01; 1804.6: 1394-404.
Using chemical derivatization and mass spectrometric analysis to characterize the post-translationally modified Staphylococcus aureus surface protein G
Suh MJ, Clark DJ, Parmer PP, Fleischmann RD, Peterson SN, Pieper R
PMID: 20176147
Applied and environmental microbiology. 2010-06-01; 76.12: 3886-97.
Diversity of 16S rRNA genes within individual prokaryotic genomes
Pei AY, Oberdorf WE, Nossa CW, Agarwal A, Chokshi P, Gerz EA, Jin Z, Lee P, Yang L, Poles M, Brown SM, Sotero S, Desantis T, Brodie E, Nelson K, Pei Z
PMID: 20418441
Genomics. 2010-06-01; 95.6: 315-27.
Assembly algorithms for next-generation sequencing data
Miller JR, Koren S, Sutton G
PMID: 20211242

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