Publications

Proteome science. 2009-02-19; 7.5.
Integral and peripheral association of proteins and protein complexes with Yersinia pestis inner and outer membranes
Pieper R, Huang ST, Clark DJ, Robinson JM, Alami H, Parmar PP, Suh MJ, Kuntumalla S, Bunai CL, Perry RD, Fleischmann RD, Peterson SN
PMID: 19228400
Proceedings of the National Academy of Sciences of the United States of America. 2009-02-10; 106.6: 1948-53.
Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases
Brulc JM, Antonopoulos DA, Miller ME, Wilson MK, Yannarell AC, Dinsdale EA, Edwards RE, Frank ED, Emerson JB, Wacklin P, Coutinho PM, Henrissat B, Nelson KE, White BA
PMID: 19181843
Proceedings of the National Academy of Sciences of the United States of America. 2009-02-10; 106.6: 1886-91.
Transcriptome-guided characterization of genomic rearrangements in a breast cancer cell line
Zhao Q, Caballero OL, Levy S, Stevenson BJ, Iseli C, de Souza SJ, Galante PA, Busam D, Leversha MA, Chadalavada K, Rogers YH, Venter JC, Simpson AJ, Strausberg RL
PMID: 19181860
PLoS computational biology. 2009-02-01; 5.2: e1000285.
A genome-scale metabolic reconstruction of Mycoplasma genitalium, iPS189
Suthers PF, Dasika MS, Kumar VS, Denisov G, Glass JI, Maranas CD
PMID: 19214212
Environmental microbiology. 2009-02-01; 11.2: 349-59.
Coastal Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity
Palenik B, Ren Q, Tai V, Paulsen IT
PMID: 19196269
Microbiology (Reading, England). 2009-02-01; 155.Pt 2: 498-512.
Temperature and growth phase influence the outer-membrane proteome and the expression of a type VI secretion system in Yersinia pestis
Pieper R, Huang ST, Robinson JM, Clark DJ, Alami H, Parmar PP, Perry RD, Fleischmann RD, Peterson SN
PMID: 19202098
The Journal of biological chemistry. 2009-01-09; 284.2: 1086-96.
Regulation of the xylan-degrading apparatus of Cellvibrio japonicus by a novel two-component system
Emami K, Topakas E, Nagy T, Henshaw J, Jackson KA, Nelson KE, Mongodin EF, Murray JW, Lewis RJ, Gilbert HJ
PMID: 18922794
Methods in molecular biology (Clifton, N.J.). 2009-01-01; 548.223-45.
Analysis of protein-protein interactions using array-based yeast two-hybrid screens
Rajagopala SV, Uetz P
PMID: 19521828
Molecular systems biology. 2009-01-01; 5.330.
A systems biology tour de force for a near-minimal bacterium
Glass JI, Hutchison CA, Smith HO, Venter JC
PMID: 19953084
Nature protocols. 2009-01-01; 4.7: 1073-81.
Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
Kumar P, Henikoff S, Ng PC
PMID: 19561590

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