Publications

Nature protocols. 2009-01-01; 4.7: 1073-81.
Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
Kumar P, Henikoff S, Ng PC
PMID: 19561590
Nucleic acids research. 2009-01-01; 37.Database issue: D211-5.
InterPro: the integrative protein signature database
Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L, Finn RD, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Laugraud A, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, Mistry J, Mitchell A, Mulder N, Natale D, Orengo C, Quinn AF, Selengut JD, Sigrist CJ, Thimma M, Thomas PD, Valentin F, Wilson D, Wu CH, Yeats C
PMID: 18940856
Medical mycology. 2009-01-01; 47 Suppl 1.S88-96.
Effect of competition on the production and activity of secondary metabolites in Aspergillus species
Losada L, Ajayi O, Frisvad JC, Yu J, Nierman WC
PMID: 19255906
Proceedings of the National Academy of Sciences of the United States of America. 2008-12-23; 105.51: 20404-9.
One-step assembly in yeast of 25 overlapping DNA fragments to form a complete synthetic Mycoplasma genitalium genome
Gibson DG, Benders GA, Axelrod KC, Zaveri J, Algire MA, Moodie M, Montague MG, Venter JC, Smith HO, Hutchison CA
PMID: 19073939
Bioinformatics (Oxford, England). 2008-12-15; 24.24: 2818-24.
Aggressive assembly of pyrosequencing reads with mates
Miller JR, Delcher AL, Koren S, Venter E, Walenz BP, Brownley A, Johnson J, Li K, Mobarry C, Sutton G
PMID: 18952627
BMC genomics. 2008-12-10; 9.595.
Genome wide survey, discovery and evolution of repetitive elements in three Entamoeba species
Lorenzi H, Thiagarajan M, Haas B, Wortman J, Hall N, Caler E
PMID: 19077187
BMC bioinformatics. 2008-12-09; 9.529.
The APEX Quantitative Proteomics Tool: generating protein quantitation estimates from LC-MS/MS proteomics results
Braisted JC, Kuntumalla S, Vogel C, Marcotte EM, Rodrigues AR, Wang R, Huang ST, Ferlanti ES, Saeed AI, Fleischmann RD, Peterson SN, Pieper R
PMID: 19068132
The ISME journal. 2008-12-01; 2.12: 1194-212.
Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter
Ivars-Martinez E, Martin-Cuadrado AB, D'Auria G, Mira A, Ferriera S, Johnson J, Friedman R, Rodriguez-Valera F
PMID: 18670397
Journal of virology. 2008-12-01; 82.24: 12422-31.
Bovine-like coronaviruses isolated from four species of captive wild ruminants are homologous to bovine coronaviruses, based on complete genomic sequences
Alekseev KP, Vlasova AN, Jung K, Hasoksuz M, Zhang X, Halpin R, Wang S, Ghedin E, Spiro D, Saif LJ
PMID: 18842722
Experimental parasitology. 2008-12-01; 120.4: 357-63.
Schistosoma mansoni: Microarray analysis of gene expression induced by host sex
Waisberg M, Lobo FP, Cerqueira GC, Passos LK, Carvalho OS, El-Sayed NM, Franco GR
PMID: 18822286

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