Publications

Nucleic acids research. 2009-01-01; 37.Database issue: D211-5.
InterPro: the integrative protein signature database
Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L, Finn RD, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Laugraud A, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, Mistry J, Mitchell A, Mulder N, Natale D, Orengo C, Quinn AF, Selengut JD, Sigrist CJ, Thimma M, Thomas PD, Valentin F, Wilson D, Wu CH, Yeats C
PMID: 18940856
Medical mycology. 2009-01-01; 47 Suppl 1.S88-96.
Effect of competition on the production and activity of secondary metabolites in Aspergillus species
Losada L, Ajayi O, Frisvad JC, Yu J, Nierman WC
PMID: 19255906
Journal of bacteriology. 2009-01-01; 191.1: 445-6.
The complete genome sequence of Bacillus anthracis Ames "Ancestor"
Ravel J, Jiang L, Stanley ST, Wilson MR, Decker RS, Read TD, Worsham P, Keim PS, Salzberg SL, Fraser-Liggett CM, Rasko DA
PMID: 18952800
Nucleic acids research. 2009-01-01; 37.Database issue: D1018-24.
The HuRef Browser: a web resource for individual human genomics
Axelrod N, Lin Y, Ng PC, Stockwell TB, Crabtree J, Huang J, Kirkness E, Strausberg RL, Frazier ME, Venter JC, Kravitz S, Levy S
PMID: 19036787
Journal of molecular microbiology and biotechnology. 2009-01-01; 16.3-4: 146-58.
PilR, a transcriptional regulator for pilin and other genes required for Fe(III) reduction in Geobacter sulfurreducens
Juárez K, Kim BC, Nevin K, Olvera L, Reguera G, Lovley DR, Methé BA
PMID: 18253022
Nucleic acids research. 2009-01-01; 37.Database issue: D464-70.
EcoCyc: a comprehensive view of Escherichia coli biology
Keseler IM, Bonavides-Martínez C, Collado-Vides J, Gama-Castro S, Gunsalus RP, Johnson DA, Krummenacker M, Nolan LM, Paley S, Paulsen IT, Peralta-Gil M, Santos-Zavaleta A, Shearer AG, Karp PD
PMID: 18974181
Eukaryotic cell. 2009-01-01; 8.1: 104-15.
Transcriptional profiling identifies a role for BrlA in the response to nitrogen depletion and for StuA in the regulation of secondary metabolite clusters in Aspergillus fumigatus
Twumasi-Boateng K, Yu Y, Chen D, Gravelat FN, Nierman WC, Sheppard DC
PMID: 19028996
Methods in molecular biology (Clifton, N.J.). 2009-01-01; 548.263-82.
Plant genome annotation methods
Ouyang S, Thibaud-Nissen F, Childs KL, Zhu W, Buell CR
PMID: 19347655
PloS one. 2009-01-01; 4.5: e5519.
Genome degradation in Brucella ovis corresponds with narrowing of its host range and tissue tropism
Tsolis RM, Seshadri R, Santos RL, Sangari FJ, Lobo JM, de Jong MF, Ren Q, Myers G, Brinkac LM, Nelson WC, Deboy RT, Angiuoli S, Khouri H, Dimitrov G, Robinson JR, Mulligan S, Walker RL, Elzer PE, Hassan KA, Paulsen IT
PMID: 19436743
PloS one. 2009-01-01; 4.5: e4207.
Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum
Wu D, Raymond J, Wu M, Chatterji S, Ren Q, Graham JE, Bryant DA, Robb F, Colman A, Tallon LJ, Badger JH, Madupu R, Ward NL, Eisen JA
PMID: 19148287

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